PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_3A98C155D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 812aa    MW: 91625.8 Da    PI: 8.9454
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_3A98C155D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.7e-1753136190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C a+++vk++ d+  +v+  +l+HnH+
  Traes_6BL_3A98C155D.1  53 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHP 134
                            5*****************9999.6677****************9988.....99*********************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_6BL_3A98C155D.1 135 VS 136
                            87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1553137IPR004330FAR1 DNA binding domain
PfamPF105514.7E-27257350IPR018289MULE transposase domain
PROSITE profilePS509669.31543579IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5547575IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
METEGAAHPP KNPRRPRRRD LNALDPYLEE SDGQDIGIPE VGMVFNNHME VNRFYRRYAR  60
RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA RIRVKLWGDK  120
LLHVELANLD HNHPVSPAMA RFLNSYKQLS GPAKRRLRMG GPGAMPVEEP SKMPVDKLGA  180
LEELLFGESK NHSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCVRNVF  240
WADAWSRAMY EYYNDTITLD TSYVVSKHDM PLVTFLGVNH HGQSVLLGCG LLSDETAETY  300
TLLFKAWVAC MSGNLPKAII TDQCRGIQSA VAEVVPGVRH RICLHQIMKK AADQLSGLSE  360
YKAISKALQK AAYDSLTVDE FEGEWSTLIT YNGLQGHDWL RSLYECRFSW VPIFLKDAFW  420
AGMSATQRSE TITPFFEGYV DLKTSLKQFL GKYEMILQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK VYTHNIFKKF QDEIEAIMYC HVSLMNGDGP ISTFNVKECI FLEDGKRTMS  540
KIFAVTYNTE EKDITCICGG FQFSGILCRH SLSVLKFQQV REVPSQYVLD RWKKDFRQLH  600
VMGRLPSDVV PDNRVDRYDY LSMRCLQLVD SAVLSDKYRL ALRLVREVEK FLLNSNTHDD  660
TQPRIKSRIP KVKPNTVTGQ NLVNVVTDNG SGPKGPEASA SAQASQIQKG AAEKAVVPAG  720
YIGVPANVQQ FMGNQAAMRP SIVYMVPSGV DPQAFGNGVL MPVMYQQMFQ IPQQPNGAAQ  780
DTLANGKRKR PRGQKPTETS HQSNGTSGPA AG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318RRPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757560.0AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964403.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5GIW90.0W5GIW9_WHEAT; Uncharacterized protein
STRINGMLOC_3334.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-132FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]